Welcome to SparsePainter!

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Welcome to SparsePainter. You can find the introduction, installation instructions, Usages and commands and Examples.

The main usage of SparsePainter is to perform Target-vs-Reference painting for local ancestry estimates, Reference-vs-Reference painting for admixture estimation, and All-vs-All painting for clustering.

More details will follow!

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Publication

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The paper for SparsePainter and PBWTpaint has now been published on Nature Communications: Yang, Y., Durbin, R., Iversen, A.K.N & Lawson, D.J. Sparse hap...

Preprint available

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Our preprint is now available online: Yang, Y., Durbin, R., Iversen, A.K.N & Lawson, D.J. Sparse haplotype-based fine-scale local ancestry inference at s...

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Publication

Preprint available